University of Colorado Anschutz Medical Campus

DATA ANALYSIS

HIMSR resources for analyses of the immune response

HIMSR will help you cover all of your analysis needs by offering self-service and fee-for-service access to state-of-the-art analysis software.

inForm software inForm
inForm is a trainable image analysis software package compatible with PhenoImager HT images. Capability includes phenotyping, co-localization, co-expression, tissue region detection (e.g. tumor versus stroma), nearest-neighbor quantification, and traditional scoring functions. This software is available for use on a dedicated analysis station within the HIMSR (sign up for time on the iLab calendar) or, for larger projects, check out a copy of inform from the HIMSR. We offer periodic workshops to help you get started with inForm and Phenoptr Reports and Akoya Biosciences’ also have great new videos on how to use these softwares [inForm and Phenoptr Reports].

Photo of Halo logo over kidney H&E HALO Image analysis software
HALO reports morphological and multiplexed expression data on a cell-by-cell basis across entire tissue sections while maintaining an interactive link between cell data and image. Sort and filter cell data to millions of cells while also visually assessing cell populations in the context of tissue architecture, leverage interactive markups to understand colocalization and explore combined phenotypes, and define custom analysis outputs.

FlowJo FlowJo
The FlowJo™ workspace is used for a variety of cytometry quantification analyses, including immunophenotyping, cell cycle, proliferation, kinetics studies, quantitative population comparison, and plate screening assays. This software is available through the Cancer Center Flow Cytometry Core.