Welcome

8:30 AM

Breakfast & Networking

8:45 AM

Welcome Remarks

Opening remarks from Dr. Kristen Wells and Dr. Casey Greene

Session 1

Sequencing technologies

Chaired by Tonya Brunetti

9 AM

Jay Hesselberth

Nanopore analysis of RNA modification and informatic challenges

9:15 AM

Christopher Hill

Computational lineage tracing in a cross-species comparison reveals conserved differentiation patterns

9:30 AM

Neelanjan Mukherjee

Decoding translational control in disease

9:45 AM

Break

Session 2

Machine learning approaches

Chaired by Souha Tifour

10 AM

Mansooreh Ahmadian

OntoTagger: a scalable ontology-grounded distant supervision framework for cross-domain biomedical text annotation

10:15 AM

James Costello

A matrix factorization method to identify biological pathways in clustered transcriptomic data

10:30 AM

Abhirupa Ghosh

Machine learning identifies the genomic signatures of antimicrobial resistance

10:45 AM

Break

Lightning Talks

Chaired by Thomas Danhorn

11 AM

Luis Aguilera

MicroLive: an image processing toolkit for quantifying live-cell single-molecule microscopy

11:03 AM

Jace Aloway

Analyzing the effects of RNA modifications on alternative splicing in pancreas development

11:06 AM

Jill Bilodeaux

A machine learning model to identify mis-aminoacylation of tRNAs from nanopore sequencing

11:09 AM

Emily Boyer

amRviz: a framework for visual interpretation of antimicrobial resistance models

11:12 AM

Evan Brenner

Genotype-to-phenotype machine learning modeling can predict pathogen host adaptation

11:15 AM

Dave Bunten

Exploring single cell images and profiles together with  CytoDataFrame

11:18 AM

Julian Grandvallet-Contreras

Multi-omic analysis reveals epigenetic mechanisms linking ARID5B rs7090445 to B-cell acute lymphoblastic leukemia incidence

11:21 AM

Emma Lathouwers

Benchmarking sample mispairing detection tools in complex cancer datasets

11:24 AM

Keenan Manpearl

Net2Onto: a network biology approach for uncovering genes involved in understudied functions, phenotypes, and diseases

11:27 AM

Nathan Witmer

Derepression of gene expression underlies HDAC inhibitor-mediated reversal of diastolic dysfunction

Keynote Presentation

Chaired by Kristen Wells

11:35 AM

Dr. Simina Boca

Associate Director of Statistical Science at AstraZeneca

"Quantitative research in drug development"

12:35 PM

Lunch, Posters, Networking

Session 3

Multiomic and integrated analysis

Chaired by Etienne Danis

1:30 PM

Chris Erickson

Digital twins of dynamic trauma endotypes reveals associations between treatment regimes, and patient biology outcomes

1:45 PM

Karen Rossmassler

Integrated analysis of the tongue microbiome in Down syndrome

2 PM

Stephanie Tanis

Deconvolution reveals compositional and malignant-intrinsic drivers of HGSC transcriptomics subtypes

2:15 PM

Closing Remarks

Dr. Kristen Wells

2:30 PM

Networking and Posters

Event ends at 3:30 PM